Tool to summarize and combine all hAMRonization reports into a single file
reports
List of multiple hAMRonization reports in either JSON or TSV format
*.{json,tsv}
format
Type of final combined report file to be produced
tsv|json|interactive
versions
File containing software versions
versions.yml
json
hAMRonised summary in JSON format
*.json
tsv
hAMRonised summary in TSV format
html
hAMRonised summary in HTML format
*.html
Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification