classification into haplogroups
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
inputfile
:file
valid options are hsd, vcf, or fasta files
*.{vcf,vcf.gz,fasta,hsd}
format
:string
either “vcf”, “fasta” or “hsd”
txt
*.txt
text file with classification information
*.{txt}
versions_haplogrep2
${task.process}
The name of the process
haplogrep2
The name of the tool
haplogrep --version 2>&1 | sed '2!d;s/.*v//'
:eval
The expression to obtain the version of the tool
versions
A tool for mtDNA haplogroup classification.
