Description

classification into haplogroups

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

inputfile:file

valid options are hsd, vcf, or fasta files

*.{vcf,vcf.gz,fasta,hsd}

format:string

either “vcf”, “fasta” or “hsd”

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

text file with classification information

*.{txt}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

haplogrep2
MIT

A tool for mtDNA haplogroup classification.