Description

classification into haplogroups

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

inputfile (file)

valid options are hsd, vcf, or fasta files

*.{vcf,vcf.gz,fasta,hsd}

format (string)

either “vcf”, “fasta” or “hsd”

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

text file with classification information

*.{txt}

Tools

haplogrep2
MIT

A tool for mtDNA haplogroup classification.