Identify cap locus serotype and structure in your Haemophilus influenzae assemblies
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
FASTA formatted assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
database_dir
Optional - Directory containing locus database
*/*
model_fp
Optional - Prodigal model to use for gene prediction
*.{bin}
versions
File containing software versions
versions.yml
gbk
GenBank file and cap locus annotations
*.gbk
svg
Visualization of annotated cap locus
*.svg
tsv
Detailed summary of cap locus annotations
*.tsv
In silico typing of the H. influenzae capsule locus
