Identify cap locus serotype and structure in your Haemophilus influenzae assemblies
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA formatted assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
database_dir
:directory
Optional - Directory containing locus database
*/*
model_fp
Optional - Prodigal model to use for gene prediction
*.{bin}
gbk
*.gbk
GenBank file and cap locus annotations
svg
*.svg
Visualization of annotated cap locus
tsv
*.tsv
Detailed summary of cap locus annotations
versions_hicap
${task.process}
:string
The name of the process
hicap
The name of the tool
hicap --version 2>&1 | sed 's/^.*hicap //'
:eval
The expression to obtain the version of the tool
versions
In silico typing of the H. influenzae capsule locus
