Identify cap locus serotype and structure in your Haemophilus influenzae assemblies
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta:file
FASTA formatted assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
database_dir:directory
Optional - Directory containing locus database
*/*
model_fp:file
Optional - Prodigal model to use for gene prediction
*.{bin}
gbk
*.gbk:file
GenBank file and cap locus annotations
*.gbk
svg
*.svg:file
Visualization of annotated cap locus
*.svg
tsv
*.tsv:file
Detailed summary of cap locus annotations
*.tsv
versions
versions.yml:file
File containing software versions
versions.yml
In silico typing of the H. influenzae capsule locus