Description

Computes PCA eigenvectors for a Hi-C matrix.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, bin:50000 ]

matrix (file)

HiCExplorer matrix in h5 format

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, bin:50000 ]

versions (file)

File containing software versions

versions.yml

results (file)

Outputs of hicPCA

pca1 (file)

PCA1 file

pca2 (file)

PCA2 file

maintainer
Github user jianhong
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

hicexplorer
GPL v3

Set of programs to process, analyze and visualize Hi-C and capture Hi-C data

hicexplorer.readthedocs.io https://github.com/deeptools/HiCExplorer 10.1038/s41467-017-02525-w