Computes PCA eigenvectors for a Hi-C matrix.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, bin:50000 ]
matrix
:file
HiCExplorer matrix in h5 format
results
${prefix}_*
Outputs of hicPCA
pca1
${prefix}_pca1.$format
PCA1 file
pca2
${prefix}_pca2.$format
PCA2 file
versions_hicexplorer
${task.process}
:string
The name of the process
hicexplorer
The name of the tool
hicPCA --version 2>&1 | sed 's/hicPCA //'
:eval
The expression to obtain the version of the tool
versions
Set of programs to process, analyze and visualize Hi-C and capture Hi-C data
