Description

Computes PCA eigenvectors for a Hi-C matrix.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, bin:50000 ]

matrix{:bash}

:file

HiCExplorer matrix in h5 format

Output

name:type
description
pattern

results{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, bin:50000 ]

${prefix}_*{:bash}

:file

Outputs of hicPCA

pca1{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, bin:50000 ]

${prefix}_pca1.$format{:bash}

:file

PCA1 file

pca2{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, bin:50000 ]

${prefix}_pca2.$format{:bash}

:file

PCA2 file

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

hicexplorer
GPL v3

Set of programs to process, analyze and visualize Hi-C and capture Hi-C data