Builds HISAT2 index for reference genome
meta
Groovy Map containing reference information e.g. [ id:'genome' ]
fasta
Reference fasta file
*.{fa,fasta,fna}
meta2
gtf
Reference gtf annotation file
*.{gtf}
meta3
splicesites
Splices sites in gtf file
*.{txt}
index
HISAT2 genome index file
*.ht2
versions
File containing software versions
versions.yml
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.