Groovy Map containing reference information
e.g. [ id:‘genome’ ]
gtf{:bash}
:file
Reference gtf annotation file
*.{gtf}
Output
name:type
description
pattern
txt{:bash}
meta{:bash}
:map
Groovy Map containing reference information
e.g. [ id:‘genome’ ]
*.splice_sites.txt{:bash}
:file
Splice sites in txt file
*.txt
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
hisat2
MIT
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
