Description

Extracts splicing sites from a gtf files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:'genome' ]

gtf (file)

Reference gtf annotation file

*.{gtf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing reference information
e.g. [ id:'genome' ]

versions (file)

File containing software versions

versions.yml

splicesites (file)

Splices sites in gtf file

*.{splice_sites.txt}

Tools

hisat2
MIT

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.