modules/hlala_preparegraph

Pre-compute the graph index structure.

hlahlalahla_typinghlala_typing

https://github.com/nf-core/modules/[...]/modules/nf-core/hlala/preparegraph

Description

Pre-compute the graph index structure.

Input

Name (Type)

Description

Pattern

`graph` (directory)

PRG graph directory

Output

Name (Type)

Description

Pattern

`versions` (file)

File containing software versions

versions.yml

`folder` (directory)

Directory containing indexed graph

Tools

hlala
GPL

HLA typing from short and long reads

github.com/DiltheyLab/HLA-LA github.com/DiltheyLab/HLA-LA#running-hlala https://github.com/DiltheyLab/HLA-LA 10.1093/bioinformatics/btz235