Description

Performs HLA typing based on a population reference graph and employs a new linear projection method to align reads to the graph.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

graph (directory)

Path to prepared graph with hla-la —acton prepareGraph

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

folder (directory)

Folder containing the HLA typing output

maintainer
Github user mapo9
get in touch
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