readCounter function from HMMcopy utilities, used to generate read in windows
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
BAM/CRAM/SAM file
*.{bam,cram,sam}
versions
File containing software versions
versions.yml
wig
A wig file with the number of reads lying within each window in each chromosome
*.wig
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
