Description

extract hmm from hmm database file or create index for hmm database

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

hmm (file)

HMM file with multiple HMM models

*.hmm

key (string)

Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.

keyfile (file)

File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built.

*.txt

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

hmm (file)

File with one or more HMM models

selection.hmm

index (file)

Index for HMM database. Created if neither key nor keyfile is specified.

*.ssi