extract hmm from hmm database file or create index for hmm database
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
hmm{:bash}
:file
HMM file with multiple HMM models
*.hmm
key{:bash}
:string
Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.
keyfile{:bash}
File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built.
*.txt
index{:bash}
Index file from another run.
*.hmm{:bash}
File with one or more HMM models
selection.hmm
*.ssi{:bash}
Index for HMM database. Created if neither key nor keyfile is specified.
*.ssi
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
