extract hmm from hmm database file or create index for hmm database
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
hmm
:file
HMM file with multiple HMM models
*.hmm
key
:string
Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.
keyfile
File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built.
*.txt
index
Index file from another run.
File with one or more HMM models
selection.hmm
*.ssi
Index for HMM database. Created if neither key nor keyfile is specified.
versions_hmmer
${task.process}
The name of the process
hmmer
The name of the tool
hmmsearch -h | sed '2!d;s/^# HMMER *//;s/ .*//'
:eval
The expression to obtain the version of the tool
versions
Biosequence analysis using profile hidden Markov models
