extract hmm from hmm database file or create index for hmm database
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
hmm:file
HMM file with multiple HMM models
*.hmm
key:string
Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.
keyfile:file
File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built.
*.txt
index:file
Index file from another run.
hmm
*.hmm:file
File with one or more HMM models
selection.hmm
index
*.ssi:file
Index for HMM database. Created if neither key nor keyfile is specified.
*.ssi
versions
versions.yml:file
File containing software versions
versions.yml
Biosequence analysis using profile hidden Markov models
