Description

extract hmm from hmm database file or create index for hmm database

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

hmm:file

HMM file with multiple HMM models

*.hmm

key:string

Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.

keyfile:file

File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built.

*.txt

index:file

Index file from another run.

Output

name:type
description
pattern

hmm

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.hmm:file

File with one or more HMM models

selection.hmm

index

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.ssi:file

Index for HMM database. Created if neither key nor keyfile is specified.

*.ssi

versions

versions.yml:file

File containing software versions

versions.yml