modules/hmtnote_annotate

Human mitochondrial variants annotation using HmtVar. Contains .plk file with annotation, so can be run offline

hmtnotemitochondriaannotation

https://github.com/nf-core/modules/[...]/modules/nf-core/hmtnote/annotate

Description

Human mitochondrial variants annotation using HmtVar. Contains .plk file with annotation, so can be run offline

Input

name:type

description

pattern

`meta{:bash}`
`:map`

Groovy Map containing sample information

`vcf{:bash}`
`:file`

vcf file

*.vcf

Output

name:type

description

pattern

`vcf{:bash}`

`meta{:bash}`
`:map`

Groovy Map containing sample information

`*_annotated.vcf{:bash}`
`:file`

annotated vcf

*_annotated.vcf

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

hmtnote
MIT

Human mitochondrial variants annotation using HmtVar.

github.com/robertopreste/HmtNote hmtnote.readthedocs.io/en/latest/usage 10.1101/600619

modules/hmtnote_annotate

Description

Input

`meta{:bash}`
`:map`

`vcf{:bash}`
`:file`

Output

`vcf{:bash}`

`meta{:bash}`
`:map`

`*_annotated.vcf{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

hmtnote
MIT

included in

maintainer

get in touch

modules/hmtnote_annotate

Description

Input

meta{:bash}:map

vcf{:bash}:file

Output

vcf{:bash}

meta{:bash}:map

*_annotated.vcf{:bash}:file

versions{:bash}

versions.yml{:bash}:file

Tools

hmtnote MIT

included in

maintainer

get in touch

`meta{:bash}`
`:map`

`vcf{:bash}`
`:file`

`vcf{:bash}`

`meta{:bash}`
`:map`

`*_annotated.vcf{:bash}`
`:file`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

hmtnote
MIT