Annotate peaks with HOMER suite
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
peak
:file
Peak file to annotate
fasta
Fasta file of reference genome
*.fasta
gtf
GTF file of reference genome
*.gtf
txt
*annotatePeaks.txt
Annotated peaks in txt file
stats
*annStats.txt
Annotation statistics in txt file
versions_homer
${task.process}
:string
The name of the process
homer
The name of the tool
4.11
The expression to obtain the version of the tool
versions
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
