Annotate peaks with HOMER suite
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
peak{:bash}
:file
Peak file to annotate
fasta{:bash}
Fasta file of reference genome
*.fasta
gtf{:bash}
GTF file of reference genome
*.gtf
txt{:bash}
*annotatePeaks.txt{:bash}
Annotated peaks in txt file
*annotatePeaks.txt
stats{:bash}
*annStats.txt{:bash}
Annotation statistics in txt file
*annStats.txt
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.
