Description

Find peaks with HOMER suite

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

tagDir{:bash}

:directory

The ‘Tag Directory’

tagDir

uniqmap{:bash}

:directory

(directory of binary files specifying uniquely mappable locations) Download from http://biowhat.ucsd.edu/homer/groseq/

uniqmap/

Output

name:type
description
pattern

txt{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.peaks.txt{:bash}

:file

Peaks in txt file

*.peaks.txt

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

homer
GPL-3.0-or-later

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.

http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer/ngs/peaks.html 10.1016/j.molcel.2010.05.004.
included in
nascent
maintainer
Github user edmundmiller
get in touch
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