Description

Find peaks with HOMER suite

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

tagDir:directory

The ‘Tag Directory’

tagDir

uniqmap:directory

(directory of binary files specifying uniquely mappable locations) Download from http://biowhat.ucsd.edu/homer/groseq/

uniqmap/

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.peaks.txt:file

Peaks in txt file

*.peaks.txt

versions

versions.yml:file

File containing software versions

versions.yml

Tools

homer
GPL-3.0-or-later

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.

http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer/ngs/peaks.html 10.1016/j.molcel.2010.05.004.
nascent
Github user edmundmiller
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