Description

Find peaks with HOMER suite

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tagDir (directory)

The ‘Tag Directory’

tagDir

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

peaks (file)

The found peaks

*.peaks.txt

versions (file)

File containing software versions

versions.yml
included in
nascent
maintainer
Github user edmundmiller
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

homer
GPL-3.0-or-later

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.

http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer/ngs/peaks.html 10.1016/j.molcel.2010.05.004.