Description

Create a UCSC bed graph with the HOMER suite

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tagDir (directory)

The ‘Tag Directory’

tagDir

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bedGraph (file)

The UCSC bed graph

*.bedGraph.gz

versions (file)

File containing software versions

versions.yml

Tools

homer
GPL-3.0-or-later

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.