modules/homer_pos2bed

Converting from HOMER peak to BED file formats

peaksbedpos

https://github.com/nf-core/modules/[...]/modules/nf-core/homer/pos2bed

Description

Converting from HOMER peak to BED file formats

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`peaks:file`

Peak file to convert to BED format

Output

name:type

description

pattern

`bed`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.bed:file`

BED file

*.bed

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

homer
GPL-3.0-or-later

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.

http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer http://homer.ucsd.edu/homer/ngs/miscellaneous.html 10.1016/j.molcel.2010.05.004.

modules/homer_pos2bed

Description

Input

meta:map

peaks:file

Output

bed

meta:map

*.bed:file

versions

versions.yml:file

Tools

homer GPL-3.0-or-later

`meta:map`

`peaks:file`

`bed`

`meta:map`

`*.bed:file`

`versions`

`versions.yml:file`

homer
GPL-3.0-or-later