Serotype prediction of Haemophilus parasuis assemblies
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Assembly in FASTA format
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}
tsv{:bash}
*.tsv{:bash}
Tab-delimited serotype prediction
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Rapid Haemophilus parasuis serotyping pipeline for Nanpore data
