count how many reads map to each feature
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
meta2
.gtf file information e.g. [ id:'test' ]
[ id:'test' ]
input
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
index
Contains indexed bam file
*.bai
gtf
Contains the features in the GTF format
*.gtf
txt
File containing feature counts output
.txt
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
