count how many reads map to each feature
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
input:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
index:file
Contains indexed bam file
*.bai
meta2:map
.gtf file information e.g. [ id:'test' ]
[ id:'test' ]
gtf:file
Contains the features in the GTF format
*.gtf
txt
*.txt:file
File containing feature counts output
.txt
versions
versions.yml:file
File containing software versions
versions.yml
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
