Assembly polisher using short (and long) reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Short reads file(s). In fastq or fasta, compressed or uncompressed
meta2
sr_bam
Aligned short-read BAM/SAM file. Must have CIGAR information.
*.{bam,sam}
draft
Input (fasta) file containing draft contig assembly
genome_size
Estimated size of the genome. Number or nts or use suffixes k/m/g, e.g. 5m, 3.2g
reads_coverage
Appprimate depth of coverage of short reads.
fasta
Polished assembly fasta file
*.fasta
versions
File containing software versions
versions.yml
Super Fast and Accurate Polisher for Long Read Genome Assemblies.
