Assembly polisher using short (and long) reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
sr_bam
:file
Aligned short-read BAM/SAM file. Must have CIGAR information.
*.{bam,sam}
meta2
reads
Short reads file(s). In fastq or fasta, compressed or uncompressed
draft
Input (fasta) file containing draft contig assembly
genome_size
:string
Estimated size of the genome. Number or nts or use suffixes k/m/g, e.g. 5m, 3.2g
reads_coverage
:integer
Appprimate depth of coverage of short reads.
fasta
*.fasta
Polished assembly fasta file
versions_hypo
${task.process}
The name of the process
hypo
The name of the tool
1.0.3
The expression to obtain the version of the tool
versions
Super Fast and Accurate Polisher for Long Read Genome Assemblies.
