Description

Plot a metagene of cross-link events/sites around various transcriptomic landmarks.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

BED file of crosslinks

segmentation (file)

A iCount segmentation file

*.{gtf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tsv (file)

Metagene table

*.tsv

versions (file)

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data