Description

Plot a metagene of cross-link events/sites around various transcriptomic landmarks.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed

:file

BED file of crosslinks

segmentation

:file

A iCount segmentation file

*.{gtf}

Output

name:type
description
pattern

tsv

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

metagene_*/*plot_data.tsv

:file

Metagene table

*.tsv

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data