Description

Plot a metagene of cross-link events/sites around various transcriptomic landmarks.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed{:bash}

:file

BED file of crosslinks

segmentation{:bash}

:file

A iCount segmentation file

*.{gtf}

Output

name:type
description
pattern

tsv{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

metagene_*/*plot_data.tsv{:bash}

:file

Metagene table

*.tsv

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data