Runs iCount peaks on a BED file of crosslinks
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
BED file of crosslinks
*.{bed}
sigxls
TSV file of sigxls from iCount sigxls
*.{tsv}
peaks
*.peaks.bed.gz
Crosslinks deemed significant by iCount
*.{bed.gz}
versions_icount_mini
${task.process}
:string
The name of the process
iCount-Mini
The name of the tool
iCount-Mini -v
:eval
The expression to obtain the version of the tool
versions
Computational pipeline for analysis of iCLIP data
