Formats a GTF file for use with iCount sigxls
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gtf{:bash}
:file
A GTF file to use for the segmentation
*.{gtf}
fai{:bash}
FAI file corresponding to the reference sequence
*.{fai}
Groovy Map containing sample information
*_seg.gtf{:bash}
Segmented GTF file for use with iCount sigxls
regions{:bash}
*_regions.gtf.gz{:bash}
Regions file for use with iCount sigxls
*.{gtf.gz}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Computational pipeline for analysis of iCLIP data
