Description

Formats a GTF file for use with iCount sigxls

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gtf (file)

A GTF file to use for the segmentation

*.{gtf}

fai (file)

FAI file corresponding to the reference sequence

*.{fai}

Output

Name (Type)
Description
Pattern

gtf (file)

Segmented GTF file for use with iCount sigxls

*.{gtf}

versions (file)

File containing software versions

versions.yml
maintainers
Github user marc-jones
Github user chris-cheshire
Github user charlotteanne
get in touch
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Tools

icount
MIT

Computational pipeline for analysis of iCLIP data

github.com/ulelab/iCount-Mini 10.1038/nsmb.1838