Runs iCount sigxls on a BED file of crosslinks
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed:file
BED file of crosslinks
*.{bam,bam.gz}
segmentation:file
A iCount segmentation file
*.{gtf}
sigxls
*.sigxls.bed.gz:file
sigxls bed file
*.{bed.gz}
scores
*.scores.tsv:file
Crosslink scores calculated by iCount
*.{tsv}
versions
versions.yml:file
File containing software versions
versions.yml
Computational pipeline for analysis of iCLIP data
