Runs iCount sigxls on a BED file of crosslinks
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bed
BED file of crosslinks
*.{bam,bam.gz}
segmentation
A iCount segmentation file
*.{gtf}
peaks
Crosslinks deemed significant by iCount
*.{bed.gz}
scores
Crosslink scores calculated by iCount
*.{tsv}
versions
File containing software versions
versions.yml
Computational pipeline for analysis of iCLIP data
