Runs iCount sigxls on a BED file of crosslinks
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
BED file of crosslinks
*.{bam,bam.gz}
segmentation
A iCount segmentation file
*.{gtf}
sigxls
*.sigxls.bed.gz
sigxls bed file
*.{bed.gz}
scores
*.scores.tsv
Crosslink scores calculated by iCount
*.{tsv}
versions
versions.yml
File containing software versions
Computational pipeline for analysis of iCLIP data
