Runs iCount sigxls on a BED file of crosslinks
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
BED file of crosslinks
*.{bam,bam.gz}
segmentation{:bash}
A iCount segmentation file
*.{gtf}
sigxls{:bash}
*.sigxls.bed.gz{:bash}
sigxls bed file
*.{bed.gz}
scores{:bash}
*.scores.tsv{:bash}
Crosslink scores calculated by iCount
*.{tsv}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Computational pipeline for analysis of iCLIP data
