Description

Runs iCount sigxls on a BED file of crosslinks

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

BED file of crosslinks

*.{bam,bam.gz}

segmentation (file)

A iCount segmentation file

*.{gtf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

peaks (file)

Crosslinks deemed significant by iCount

*.{bed.gz}

scores (file)

Crosslink scores calculated by iCount

*.{tsv}

versions (file)

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data