Description

Report proportion of cross-link events/sites on each region type.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

bed:file

BED file of crosslinks

segmentation:file

A iCount segmentation file

*.{gtf}

Output

name:type
description
pattern

summary_type

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*summary_type.tsv:file

Summary type output stats file

*summary_type.tsv

summary_subtype

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*summary_subtype.tsv:file

Summary subtype output stats file

*summary_subtype.tsv

summary_gene

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*summary_gene.tsv:file

Summary gene output stats file

*summary_gene.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data