Report proportion of cross-link events/sites on each region type.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
BED file of crosslinks
segmentation{:bash}
A iCount segmentation file
*.{gtf}
summary_type{:bash}
*summary_type.tsv{:bash}
Summary type output stats file
*summary_type.tsv
summary_subtype{:bash}
*summary_subtype.tsv{:bash}
Summary subtype output stats file
*summary_subtype.tsv
summary_gene{:bash}
*summary_gene.tsv{:bash}
Summary gene output stats file
*summary_gene.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Computational pipeline for analysis of iCLIP data
