Description

Report proportion of cross-link events/sites on each region type.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bed (file)

BED file of crosslinks

segmentation (file)

A iCount segmentation file

*.{gtf}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

summary_type (file)

Summary type output stats file

*summary_type.tsv

summary_subtype (file)

Summary subtype output stats file

*summary_subtype.tsv

summary_gene (file)

Summary gene output stats file

*summary_gene.tsv

versions (file)

File containing software versions

versions.yml

Tools

icount
MIT

Computational pipeline for analysis of iCLIP data