Demultiplex paired-end FASTQ files from QuantSeq-Pool
meta
:map
Groovy Map containing sample information e.g. [ id:‘NVQ’, lane:1 ]
reads
:file
List of input FastQ files
Undetermined_S*.fastq.gz
samplesheet
Input samplesheet
*.{csv}
fastq
[!undetermined]*.fastq.gz
Demultiplexed sample FASTQ files
*.fastq.gz
undetermined
undetermined_R?.fastq.gz
Optional undetermined sample FASTQ files
Undetermined_R?.fastq.gz
stats
demultipexing_stats.tsv
Demultiplexing Stats
versions_idemux
${task.process}
:string
The name of the process
idemux
The name of the tool
idemux --version |& sed '1!d ; s/idemux //'
:eval
The expression to obtain the version of the tool
versions
A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.
