Demultiplex paired-end FASTQ files from QuantSeq-Pool
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘NVQ’, lane:1 ]
reads{:bash}
:file
List of input FastQ files
Undetermined_S*.fastq.gz
samplesheet{:bash}
Input samplesheet
*.{csv}
fastq{:bash}
Demultiplexed sample FASTQ files
*.fastq.gz
[!undetermined]*.fastq.gz{:bash}
undetermined{:bash}
undetermined_R?.fastq.gz{:bash}
Optional undetermined sample FASTQ files
Undetermined_R?.fastq.gz
stats{:bash}
demultipexing_stats.tsv{:bash}
Demultiplexing Stats
demultipexing_stats.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.
