Description

igv.js is an embeddable interactive genome visualization component

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

alignment (file)

Sorted BAM/CRAM file

*.{bam,cram}

index (file)

Index of sorted BAM/CRAM file

*.{bai,crai}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

browser (file)

Genome browser HTML file

*.{html}

align_files (file)

Copy of the input sorted BAM/CRAM file

*.{bam,cram}

index_files (file)

Copy of the input index of sorted BAM/CRAM file

*.{bai,crai}

versions (file)

File containing software versions

versions.yml
mantainer
Github user mirpedrol
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Tools

igv
MIT

Create an embeddable interactive genome browser component. Output files are expected to be present in the same directory as teh genome browser html file. To visualise it, files have to be served. Check the documentation at: https://github.com/igvteam/igv-webapp for an example and https://github.com/igvteam/igv.js/wiki/Data-Server-Requirements for server requirements

github.com/igvteam/igv.js github.com/igvteam/igv.js/wiki https://github.com/igvteam/igv.js10.1093/bioinformatics/btac830