modules/igvreports

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

VCF, BED, MAF, BEDPE, or generic tab delimited file of genomic variant sites

List of any set of files of the types that IGV can display,
eg BAM/CRAM, GTF/GFF, VCF, BED, etc

Track index files, eg bai/crai files. This may not be required,
but for some file types, eg BAM/CRAM, they are. They are not used in the
igvreports cmds, but may need to exist in the working directory

Groovy Map containing genome information
e.g. [ id:‘genome_name’ ]

Reference fasta file

Reference fasta file index