Strain-level comparisons across multiple inStrain profiles
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
profiles
InStrain profile folders
*.IS/
bams
Path to .bam files that were profiled
*.{bam,sam}
stb_file
Path to .stb (scaffold to bin) file that was profiled
*.stb
versions
File containing software versions
versions.yml
compare
inStrain compare folders
*.IS_compare/
comparisons_table
Comparisons table
*.tsv
pooled_snv
Pooled SNV
snv_info
SNV information
snv_keys
SNV keys
Calculation of strain-level metrics
