Description

Produces protein annotations and predictions from an amino acids FASTA file

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Input fasta file containing the amino acid or dna query sequences

*.{fa,fasta,fa.gz,fasta.gz}

Output

name:type
description
pattern

tsv{:bash}

meta{:bash}

:map

Groovy Map containing sample information

*.tsv{:bash}

:file

Tab separated file containing with detailed hits

*.{tsv}

xml{:bash}

meta{:bash}

:map

Groovy Map containing sample information

*.xml{:bash}

:file

XML file containing with detailed hits

*.{xml}

gff3{:bash}

meta{:bash}

:map

Groovy Map containing sample information

*.gff3{:bash}

:file

GFF3 file containing with detailed hits

*.{gff3}

json{:bash}

meta{:bash}

:map

Groovy Map containing sample information

*.json{:bash}

:file

JSON file containing with detailed hits

*.{json}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

interproscan
GPL v3

InterPro integrates together predictive information about proteins function from a number of partner resources

ebi.ac.uk/interpro/search/sequence interproscan-docs.readthedocs.io https://github.com/ebi-pf-team/interproscan 10.1093/bioinformatics/btu031
included in
funcscan
maintainers
Github user toniher
Github user vagkaratzas
Github user mahesh-panchal
get in touch
Ask a question on Slack Open an issue on GitHub