Description

Produces protein annotations and predictions from a FASTA file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Input fasta file containing query sequences

*.{fa,fasta}

out_ext (string)

Specify the type of output file to be generated

tsv|xml|gff3|json

Output

Name (Type)
Description
Pattern

tsv (file)

Tab separated file containing with detailed hits

*.{tsv}

xml (file)

XML file containing with detailed hits

*.{xml}

gff3 (file)

GFF3 file containing with detailed hits

*.{gff3}

json (file)

JSON file containing with detailed hits

*.{json}

versions (file)

File containing software versions

versions.yml
author
Github user toniher
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Tools

interproscan
GPL v3

InterPro integrates together predictive information about proteins function from a number of partner resources

ebi.ac.uk/interpro/search/sequence interproscan-docs.readthedocs.io https://github.com/ebi-pf-team/interproscan 10.1093/bioinformatics/btu031