Description

Produces protein annotations and predictions from an amino acids FASTA file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta:file

Input fasta file containing the amino acid or dna query sequences

*.{fa,fasta,fa.gz,fasta.gz}

Output

name:type
description
pattern

tsv

meta:file

Tab separated file containing with detailed hits

*.{tsv}

*.tsv:file

Tab separated file containing with detailed hits

*.{tsv}

xml

meta:file

XML file containing with detailed hits

*.{xml}

*.xml:file

XML file containing with detailed hits

*.{xml}

gff3

meta:file

GFF3 file containing with detailed hits

*.{gff3}

*.gff3:file

GFF3 file containing with detailed hits

*.{gff3}

json

meta:file

JSON file containing with detailed hits

*.{json}

*.json:file

JSON file containing with detailed hits

*.{json}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

interproscan
GPL v3

InterPro integrates together predictive information about proteins function from a number of partner resources

ebi.ac.uk/interpro/search/sequence interproscan-docs.readthedocs.io https://github.com/ebi-pf-team/interproscan 10.1093/bioinformatics/btu031
funcscan
Github user toniher
Github user vagkaratzas
Github user mahesh-panchal
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