Predict phage host using iPHoP
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA file containing phage contigs/scaffolds/chromosomes
*.{fasta,fna,fa}
iphop_db{:bash}
:directory
Directory pointing to iPHoP database
iphop_genus{:bash}
Host_prediction_to_genus_m*.csv{:bash}
File containing integrated host predictions at genus level, with a minimum score defined by the --min_score argument
--min_score
Host_prediction_to_genus_m*.csv
iphop_genome{:bash}
Host_prediction_to_genome_m*.csv{:bash}
File containing integrated host predictions at host genome level, with a minimum score defined by the --min_score argument
Host_prediction_to_genome_m*.csv
iphop_detailed_output{:bash}
Detailed_output_by_tool.csv{:bash}
File containing each phage’s top 5 hits via each method
Detailed_output_by_tool.csv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Predict host genus from genomes of uncultivated phages.
