Description

Predict phage host using iPHoP

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file containing phage contigs/scaffolds/chromosomes

*.{fasta,fna,fa}

iphop_db (directory)

Directory pointing to iPHoP database

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

iphop_genus (file)

File containing integrated host predictions at genus level, with a minimum score defined by the --min_score argument

Host_prediction_to_genus_m*.csv

iphop_genome (file)

File containing integrated host predictions at host genome level, with a minimum score defined by the --min_score argument

Host_prediction_to_genome_m*.csv

iphop_detailed_output (file)

File containing each phage’s top 5 hits via each method

Detailed_output_by_tool.csv
author
Github user CarsonJM
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Tools

iphop
Modified GPL v3

Predict host genus from genomes of uncultivated phages.

bitbucket.org/srouxjgi/iphop/src/main 10.1371/journal.pbio.3002083