Predict phage host using iPHoP
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA file containing phage contigs/scaffolds/chromosomes
*.{fasta,fna,fa}
iphop_db
:directory
Directory pointing to iPHoP database
iphop_genus
Host_prediction_to_genus_m*.csv
File containing integrated host predictions at genus level, with a minimum score defined by the --min_score argument
--min_score
iphop_genome
Host_prediction_to_genome_m*.csv
File containing integrated host predictions at host genome level, with a minimum score defined by the --min_score argument
iphop_detailed_output
Detailed_output_by_tool.csv
File containing each phage’s top 5 hits via each method
versions
versions.yml
File containing software versions
Predict host genus from genomes of uncultivated phages.
