Description

Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.

Input

Name (Type)
Description
Pattern

alignment (file)

A FASTA format multiple sequence alignment file

*.{fasta,fas,fa,mfa}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

phylogeny (file)

A phylogeny in Newick format

*.{treefile}

Tools

iqtree
GPL v2-or-later

Efficient phylogenomic software by maximum likelihood.