Genomic island prediction in bacterial and archaeal genomes
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information
e.g. [ id:โtestโ, single_end:false ]
genome
:file
Genome file in .gbk or .embl format.
pattern: โ*.{gbk, embl, gbff}โ
Output
name:type
description
pattern
gff
meta
:file
GFF file listing the predicted genomic islands and their coordinates
*.gff
*.gff
:file
GFF file listing the predicted genomic islands and their coordinates
*.gff
log
Dimob.log
:file
Log file of the islandpath run
*.log
versions_islandpath
${task.process}
:string
The name of the process
islandpath
:string
The name of the tool
1.0.6
:string
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
islandpath
:string
The name of the tool
1.0.6
:string
The expression to obtain the version of the tool
Tools
islandpath
GPL v3
IslandPath-DIMOB is a standalone software to predict genomic islands (GIs - clusters of genes in prokaryotic genomes of probable horizontal origin) in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.
