Description

Genomic island prediction in bacterial and archaeal genomes

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

genome (file)

Genome file in .gbk or .embl format.
pattern: ”*.{gbk, embl, gbff}”

Output

Name (Type)
Description
Pattern

gff (file)

GFF file listing the predicted genomic islands and their coordinates

*.gff

log (file)

Log file of the islandpath run

*.log

versions (file)

File containing software versions

versions.yml

Tools

islandpath
GPL v3

IslandPath-DIMOB is a standalone software to predict genomic islands (GIs - clusters of genes in prokaryotic genomes of probable horizontal origin) in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.