Genomic island prediction in bacterial and archaeal genomes
Input
name:type
description
pattern
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:โtestโ, single_end:false ]
genome{:bash}
:file
Genome file in .gbk or .embl format.
pattern: โ*.{gbk, embl, gbff}โ
Output
name:type
description
pattern
gff{:bash}
meta{:bash}
:file
GFF file listing the predicted genomic islands and their coordinates
*.gff
*.gff{:bash}
:file
GFF file listing the predicted genomic islands and their coordinates
*.gff
log{:bash}
Dimob.log{:bash}
:file
Log file of the islandpath run
*.log
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
islandpath
GPL v3
IslandPath-DIMOB is a standalone software to predict genomic islands (GIs - clusters of genes in prokaryotic genomes of probable horizontal origin) in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.
