Identify insertion sites positions in bacterial genomes
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
A set of paired-end FASTQ files
*.{fastq.gz,fq.gz}
reference:file
Reference genome in GenBank format
*.{gbk}
query:file
Insertion sequences to query in FASTA format
*.{fasta,fa}
results
results/*:directory
Directory containing ISMapper result files
*/*
versions
versions.yml:file
File containing software versions
versions.yml
A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.
