Identify insertion sites positions in bacterial genomes
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
A set of paired-end FASTQ files
*.{fastq.gz,fq.gz}
reference{:bash}
Reference genome in GenBank format
*.{gbk}
query{:bash}
Insertion sequences to query in FASTA format
*.{fasta,fa}
results{:bash}
results/*{:bash}
:directory
Directory containing ISMapper result files
*/*
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.
