modules/isoseq3_refine

Groovy Map containing sample information e.g. [ id:‘test’ ]

Set of complete reads (with polyA tail), where the polyA has been trimmed

Pacbio index file from polyA trimmed reads

Metadata about read library

json file describing number of full length reads, full length non chimeric reads and full length non chimeric polyA reads

Metadata about primer and polyA detection (primers/polyA/insert length, strand, primer name)

File containing software versions