Extract UMI and cell barcodes
meta
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
bam
BAM file, one full-length CCS file generated by lima
*.5p--3p.bam
design
Barcoding design. Specifies which bases to use as cell/molecular barcodes.
^(?:\d{1,2}[UBGX]-)+T$|^(?:\d{1,2}[UBGX]-)+T(?:-\d{1,2}[UBGX])+$|^T(?:-\d{1,2}[UBGX])+$
Groovy Map containing sample information e.g. [ id:'sample1']
[ id:'sample1']
versions
File containing software versions
versions.yml
BAM file with full-length tagged reads
*.flt.bam
pbi
Pacbio index file of full-length tagged reads
*.flt.bam.pbi
Iso-Seq - Scalable De Novo Isoform Discovery
