Extract UMI and cell barcodes
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
bam{:bash}
:file
BAM file, one full-length CCS file generated by lima
*.5p--3p.bam
design{:bash}
:string
Barcoding design. Specifies which bases to use as cell/molecular barcodes.
^(?:\d{1,2}[UBGX]-)+T$|^(?:\d{1,2}[UBGX]-)+T(?:-\d{1,2}[UBGX])+$|^T(?:-\d{1,2}[UBGX])+$
Groovy Map containing sample information e.g. [ id:'sample1']
[ id:'sample1']
*.flt.bam{:bash}
BAM file with full-length tagged reads
*.flt.bam
pbi{:bash}
*.flt.bam.pbi{:bash}
Pacbio index file of full-length tagged reads
*.flt.bam.pbi
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Iso-Seq - Scalable De Novo Isoform Discovery
