modules/isoseq_cluster

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

File containing software version

BAM file of clustered consensus

Pacbio Index of consensus reads generated by clustering

A two columns (from, to) file describing original read name to new read name

A table files clusters (transcripts) members (read)

A metadata xml file which contains full paths to data files

High quality reads (when —use-qvs is set)

Pacbio index of high quality reads (when —use-qvs is set)

Low quality reads (when —use-qvs is set)

Pacbio index of low quality reads (when —use-qvs is set)

Unclustered reads (when —singletons is set)

Pacbio index of unclustered reads (when —singletons is set)