IsoSeq - Cluster - Cluster trimmed consensus sequences
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bam:file
BAM file generated by isoseq refine
*.bam
bam
Groovy Map containing sample information e.g. [ id:‘test’, single_end
*.transcripts.bam:file
BAM file of clustered consensus
*.transcripts.bam
pbi
*.transcripts.bam.pbi:file
Pacbio Index of consensus reads generated by clustering
*.transcripts.bam.pbi
cluster
*.transcripts.cluster:file
A two columns (from, to) file describing original read name to new read name
*.transcripts.cluster
cluster_report
*.transcripts.cluster_report.csv:file
A table files clusters (transcripts) members (read)
*.transcripts.cluster_report.csv
transcriptset
*.transcripts.transcriptset.xml:file
A metadata xml file which contains full paths to data files
*.transcripts.transcriptset.xml
hq_bam
*.transcripts.hq.bam:file
High quality reads (when —use-qvs is set)
*.transcripts.hq.bam
hq_pbi
*.transcripts.hq.bam.pbi:file
Pacbio index of high quality reads (when —use-qvs is set)
*.transcripts.hq.bam.pbi
lq_bam
*.transcripts.lq.bam:file
Low quality reads (when —use-qvs is set)
*.transcripts.lq.bam
lq_pbi
*.transcripts.lq.bam.pbi:file
Pacbio index of low quality reads (when —use-qvs is set)
*.transcripts.lq.bam.pbi
singletons_bam
*.transcripts.singletons.bam:file
Unclustered reads (when —singletons is set)
*.transcripts.singletons.bam
singletons_pbi
*.transcripts.singletons.bam.pbi:file
Pacbio index of unclustered reads (when —singletons is set)
*.transcripts.singletons.bam.pbi
versions
versions.yml:file
File containing software version
versions.yml
