Remove polyA tail and artificial concatemers
meta
Groovy Map containing sample information e.g. [ id:‘test ]
bam
BAM file, cleaned ccs generated by lima
*.bam
primers
fasta file of primers
*.fasta
Groovy Map containing sample information e.g. [ id:‘test’ ]
Set of complete reads (with polyA tail), where the polyA has been trimmed
pbi
Pacbio index file from polyA trimmed reads
*.pbi
consensusreadset
Metadata about read library
*.xml
summary
json file describing number of full length reads, full length non chimeric reads and full length non chimeric polyA reads
*.json
report
Metadata about primer and polyA detection (primers/polyA/insert length, strand, primer name)
*.csv
versions
File containing software versions
versions.yml
IsoSeq - Scalable De Novo Isoform Discovery
