Trim primer sequences rom a BAM file with iVar
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
Co-ordinate sorted BAM file
*.bam
bai{:bash}
Index file for co-ordinate sorted BAM file
*.bai
bed{:bash}
BED file with primer labels and positions
*.bed
*.bam{:bash}
iVar generated trimmed bam file (unsorted)
log{:bash}
*.log{:bash}
Log file generated by iVar for use with MultiQC
*.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
iVar - a computational package that contains functions broadly useful for viral amplicon-based sequencing.
