Trim primer sequences rom a BAM file with iVar
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
Co-ordinate sorted BAM file
*.bam
bai:file
Index file for co-ordinate sorted BAM file
*.bai
bed:file
BED file with primer labels and positions
*.bed
bam
*.bam:file
iVar generated trimmed bam file (unsorted)
log
*.log:file
Log file generated by iVar for use with MultiQC
*.log
versions
versions.yml:file
File containing software versions
versions.yml
iVar - a computational package that contains functions broadly useful for viral amplicon-based sequencing.
