Jointly Accurate Sv Merging with Intersample Network Edges
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcfs:list
The VCF files that need to be merged
*.{vcf,vcf.gz}
bams:list
Optional - The BAM files from which the VCFs were created
*.bam
sample_dists:file
Optional - A txt file containing the distance thresholds for each sample
*.txt
meta2:map
Groovy Map containing fasta information e.g. [ id:‘test’, single_end:false ]
fasta:file
Optional - The reference FASTA file used to create the VCFs
*.{fasta,fa}
meta3:map
Groovy Map containing fasta index information e.g. [ id:‘test’, single_end:false ]
fasta_fai:file
Optional - The index of the reference FASTA file used to create the VCFs
*.fai
chr_norm:file
Optional - A txt file containing the chromosomes and their aliases for normalization
vcf
*.vcf.gz:file
The merged VCF file
*.vcf.gz
versions
versions.yml:file
File containing software versions
versions.yml
Software for merging structural variants between individuals
