Jointly Accurate Sv Merging with Intersample Network Edges
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
vcfs
The VCF files that need to be merged
*.{vcf,vcf.gz}
bams
Optional - The BAM files from which the VCFs were created
*.bam
sample_dists
Optional - A txt file containing the distance thresholds for each sample
*.txt
meta2
Groovy Map containing fasta information e.g. [ id:‘test’, single_end
fasta
Optional - The reference FASTA file used to create the VCFs
*.{fasta,fa}
meta3
Groovy Map containing fasta index information e.g. [ id:‘test’, single_end
fasta_fai
Optional - The index of the reference FASTA file used to create the VCFs
*.fai
chr_norm
Optional - A txt file containing the chromosomes and their aliases for normalization
versions
File containing software versions
versions.yml
vcf
The merged VCF file
*.vcf.gz
Software for merging structural variants between individuals
