Extract BED file from hts files containing a dictionary (VCF,BAM, CRAM, DICT, etc…)
meta
:map
Groovy Map containing dict file information e.g. [ id:‘test_reference’ ]
dict_files
:file
File(s) containing a dictionary VCF/BCF/BAM/DICT etc…
*.{vcf,bcf,vcf.gz,bcf.gz,dict,fai,bam,cram,interval_list}
bed
Groovy Map containing VCF information e.g. [ id:‘test’, single_end:false ]
*.bed
BED output file
*.{vcf,bcf,vcf.gz,bcf.gz}
versions_jvarkit
${task.process}
:string
The name of the process
jvarkit
The name of the tool
jvarkit -v
:eval
The expression to obtain the version of the tool
versions
Java utilities for Bioinformatics.
$args
