Extract BED file from hts files containing a dictionary (VCF,BAM, CRAM, DICT, etc…)
meta{:bash}
:map
Groovy Map containing dict file information e.g. [ id:‘test_reference’ ]
dict_files{:bash}
:file
File(s) containing a dictionary VCF/BCF/BAM/DICT etc…
*.{vcf,bcf,vcf.gz,bcf.gz,dict,fai,bam,cram,interval_list}
bed{:bash}
Groovy Map containing VCF information e.g. [ id:‘test’, single_end:false ]
*.bed{:bash}
BED output file
*.{vcf,bcf,vcf.gz,bcf.gz}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Java utilities for Bioinformatics.
$args
