Description

Taxonomic classification of metagenomic sequence data using a protein reference database

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

reads:file

List of input fastq/fasta files of size 1 and 2 for single-end and paired-end data, respectively.

*.{fastq,fq,fasta,fa,fsa,fas,fna,fastq.gz,fq.gz,fasta.gz,fa.gz,fsa.gz,fas.gz,fna.gz}

db:directory

List containing the database and nodes files for Kaiju e.g. [ ‘database.fmi’, ‘nodes.dmp’ ]

Output

name:type
description
pattern

results

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tsv:file

Results with taxonomic classification of each read

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

taxprofiler
Github user talnor
Github user sofstam
Github user jfy133
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