Description

Convert Kaiju’s tab-separated output file into a tab-separated text file which can be imported into Krona.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

tsv:file

Kaiju tab-separated output file

*.{tsv,txt}

db:file

Kaiju database file

Output

name:type
description
pattern

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

Krona text-based input file converted from Kaiju report

*.{txt,krona}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

included in
taxprofiler
maintainer
Github user MillironX
get in touch
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