Description

Convert Kaiju’s tab-separated output file into a tab-separated text file which can be imported into Krona.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

tsv (file)

Kaiju tab-separated output file

*.{tsv,txt}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

txt (file)

Krona text-based input file converted from Kaiju report

*.{txt,krona}
included in
taxprofiler
maintainer
Github user MillironX
get in touch
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