Description

Convert Kaiju’s tab-separated output file into a tab-separated text file which can be imported into Krona.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

tsv{:bash}

:file

Kaiju tab-separated output file

*.{tsv,txt}

db{:bash}

:file

Kaiju database file

Output

name:type
description
pattern

txt{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt{:bash}

:file

Krona text-based input file converted from Kaiju report

*.{txt,krona}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

included in
taxprofilerviralmetagenome
maintainer
Github user MillironX
get in touch
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